Package: DiscreteFDR 2.1.1

DiscreteFDR: FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests

Implementations of the multiple testing procedures for discrete tests described in the paper Döhler, Durand and Roquain (2018) "New FDR bounds for discrete and heterogeneous tests" <doi:10.1214/18-EJS1441>. The main procedures of the paper (HSU and HSD), their adaptive counterparts (AHSU and AHSD), and the HBR variant are available and are coded to take as input the results of a test procedure from package 'DiscreteTests', or a set of observed p-values and their discrete support under their nulls. A shortcut function to obtain such p-values and supports is also provided, along with a wrapper allowing to apply discrete procedures directly to data.

Authors:Sebastian Döhler [aut, ctb], Florian Junge [aut, ctb, cre], Guillermo Durand [aut, ctb], Etienne Roquain [ctb], Christina Kihn [ctb]

DiscreteFDR_2.1.1.tar.gz
DiscreteFDR_2.1.1.zip(r-4.7)DiscreteFDR_2.1.1.zip(r-4.6)DiscreteFDR_2.1.1.zip(r-4.5)
DiscreteFDR_2.1.1.tgz(r-4.6-x86_64)DiscreteFDR_2.1.1.tgz(r-4.6-arm64)DiscreteFDR_2.1.1.tgz(r-4.5-x86_64)DiscreteFDR_2.1.1.tgz(r-4.5-arm64)
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DiscreteFDR_2.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DiscreteFDR/json (API)

# Install 'DiscreteFDR' in R:
install.packages('DiscreteFDR', repos = c('https://disohda.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/disohda/discretefdr/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

5.26 score 4 stars 2 packages 19 scripts 330 downloads 9 exports 18 dependencies

Last updated from:fadfbdbe41. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK179
linux-devel-x86_64OK188
source / vignettesOK308
linux-release-arm64OK195
linux-release-x86_64OK153
macos-release-arm64OK166
macos-release-x86_64OK241
macos-oldrel-arm64OK136
macos-oldrel-x86_64OK327
windows-develOK161
windows-releaseOK277
windows-oldrelOK132
wasm-releaseOK186

Exports:ADBHDBHDBRDBYdirect.discrete.BHdiscrete.BHfast.Discretefisher.pvalues.supportgenerate.pvalues

Dependencies:backportscheckmatecliDiscreteDatasetsDiscreteTestsgluelifecyclemagrittrpillarpkgconfigR6RcppRcppArmadillorlangtibbleutf8vctrswithr

A Toy Example
1. A Toy Example
Rendered fromtoyexample.Rmdusingknitr::rmarkdown

Last update: 2026-02-13
Started: 2024-07-03

Further Analyses
2. Further Analyses | 2.1. Analysis of Pharmacovigilance Data | 2.2. Other Types of Discrete Tests
Rendered fromfurtheranalyses.Rmdusingknitr::rmarkdown

Last update: 2026-02-13
Started: 2024-07-03

DiscreteFDR: An R package for controlling the false discovery rate for discrete test statistics
Introduction | Examples | New procedures | Implementation | Examples | Summary | Acknowledgements | Run Time Comparison Tables
Rendered fromDiscreteFDR_vignette.pdf.asisusingR.rsp::asis

Last update: 2024-07-03
Started: 2021-07-28

Introduction to DiscreteFDR
Rendered fromDiscreteFDR.Rmdusingknitr::rmarkdown

Last update: 2024-07-03
Started: 2021-07-28

Readme and manuals

Help Manual

Help pageTopics
Wrapper Functions for the Adaptive Discrete Benjamini-Hochberg ProcedureADBH ADBH.default ADBH.DiscreteTestResults
Wrapper Functions for the Discrete Benjamini-Hochberg ProcedureDBH DBH.default DBH.DiscreteTestResults
The Discrete Blanchard-Roquain ProcedureDBR DBR.default DBR.DiscreteTestResults
The Discrete Benjamini-Yekutieli ProcedureDBY DBY.default DBY.DiscreteTestResults
Direct Application of Multiple Testing Procedures to Datasetdirect.discrete.BH
The Discrete Benjamini-Hochberg Procedurediscrete.BH discrete.BH.default discrete.BH.DiscreteTestResults
FDR-based Multiple Testing Procedures with Adaptation for Discrete TestsDiscreteFDR-package DiscreteFDR
Fast Application of Discrete Multiple Testing Proceduresfast.Discrete
Computing Discrete P-Values and Their Supports for Fisher's Exact Testfisher.pvalues.support
Generation of P-Values and Their Supports After Data Transformationsgenerate.pvalues
Histogram of Raw P-Valueshist.DiscreteFDR
Kernel Functionskernel kernel_ADBH_crit kernel_ADBH_fast kernel_DBH_crit kernel_DBH_fast kernel_DBR_crit kernel_DBR_fast kernel_DBY_crit kernel_DBY_fast
Plot Method for 'DiscreteFDR' objectsplot.DiscreteFDR
Printing DiscreteFDR resultsprint.DiscreteFDR
Summarizing Discrete FDR Resultsprint.summary.DiscreteFDR summary.DiscreteFDR